Cellulases and polyphenol oxidases from thermophilic Bacillus spp. isolated from compost

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This digital document is a journal article from Soil Biology and Biochemistry, published by Elsevier in 2006. The article is delivered in HTML format and is available in your Amazon.com Media Library immediately after purchase. You can view it with any web browser.

Description:
In composting, organic matter is degraded by cellulases and ligninolytic enzymes at temperatures typically above 50^oC. This study isolated thermophilic microorganisms from a compost system that were then screened for cellulase and polyphenol oxidase activity. Temperature optima for the cellulases and polyphenol oxidases were determined as 70 and 40^oC, respectively. Maximal cellulase activity was determined as 1.333mg glucose released ml^-^1min^-^1. Maximal polyphenol oxidase activity attained was 5.111nmolphenolml^-^1min^-^1. Cellulases were found to be stable over a period of 1h. The isolated compost microorganisms were identified as strains of Bacillus using 16S ribosomal DNA sequence analysis.

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Short-term effects of defoliation on the soil microbial community associated with two contrasting Lolium perenne cultivars

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This digital document is a journal article from Soil Biology and Biochemistry, published by Elsevier in 2004. The article is delivered in HTML format and is available in your Amazon.com Media Library immediately after purchase. You can view it with any web browser.

Description:
Intra-species variation in response to defoliation and soil amendment has been largely neglected in terms of the soil microbial community (SMC). The influence of defoliation and soil fertiliser amendment on the structure of the SMC was assessed with two Lolium perenne cultivars contrasting in ability to accumulate storage reserves. Plant response to defoliation was cultivar specific and depended on the nutrient amendment of the soil. Results suggested a greater ability to alter plant biomass allocation in the low carbohydrate accumulating cultivar (S23) compared to the high carbohydrate cultivar (AberDove) when grown in improved (IMP), but not in unimproved (UNI), soil. Although differences in plant growth parameters were evident, no treatment effects were detected in the size of the active microbial biomass (total phospholipid fatty acid (PLFA) 313.8nmolg^-^1 soil+/-33.9) or proportions of PLFA signature groups. A lower average well colour development (AWCD) of Biolog sole carbon source utilisation profiles (SCSUPs) in defoliated (D) compared to non-defoliated (ND) treatments may be indicative of lower root exudation 1 week following defoliation, as a consequence of lower root non-structural carbohydrate (NSC) concentrations. Within the bacterial community the lower cyclopropyl-to-precursor ratio of PLFAs, and the trans/cis ratio of 16:1w7, in UNI relative to IMP soil treatments indicates lower physiological stress in UNI soils regardless of L. perenne cultivar. Discrimination of broad scale SMC structure, measured by PLFA analysis, revealed that soil treatment interacted strongly with cultivar and defoliation. In IMP soils the SMCs discriminated between cultivars while defoliation had little effect. Conversely, in UNI soils defoliation caused a common shift in the SMC associated with both cultivars, causing convergence of overall community structure. Separation of SMC structure along the primary canonical axis correlated most strongly (P<0.001) with root:shoot ratio (47.6%), confirming that differences in cultivar C-partitioning between treatments were influential in defining the rhizosphere microbial community.

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Polysaccharides and monosaccharides in the hyphosphere of the arbuscular mycorrhizal fungi Glomus E3 and Glomus tenue

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This digital document is a journal article from Soil Biology and Biochemistry, published by Elsevier in 2007. The article is delivered in HTML format and is available in your Amazon.com Media Library immediately after purchase. You can view it with any web browser.

Description:
Plants colonised with the arbuscular mycorrhizal fungi (AMF) Glomus E3 and Glomus tenue were grown in microcosms that permitted separation into root:hyphae and hyphae compartments. Hydrolysed polysaccharides from the hyphae and water-soluble sugars released into the hyphosphere were assayed using chromatography. Total sugars and most monosaccharides were elevated in the hyphosphere of Glomus E3 but not in the hyphosphere of G. tenue. Differences in the levels of sugars did not depend on hyphal surface area. It is suggested the diversity in sugars produced in the hyphosphere of AMF may drive some of the spatial and temporal variation in microbial diversity and function in soils.

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In situ carbon and nitrogen dynamics in ryegrass-clover mixtures: Transfers, deposition and leaching

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This digital document is a journal article from Soil Biology and Biochemistry, published by Elsevier in 2007. The article is delivered in HTML format and is available in your Amazon.com Media Library immediately after purchase. You can view it with any web browser.

Description:
Carbon (C) and nitrogen (N) dynamics in a third production year ryegrass-clover mixture were investigated in the field. Cylinders (diameter 29.7cm) were installed to depths of 20, 40 and 60cm and equipped with suction cups to collect percolating pore water. Ryegrass and clover leaves were cross-labelled with ^1^4C- and ^1^5N-enriched urea and the fate of the two tracers was studied for 3 months during summer. Transfer of ^1^4C occurred mainly from ryegrass to clover, whereas the largest transfer of ^1^5N was in the opposite direction. The average transfer of N from clover was 40% (SE+/-3.1, n=9) of N in ryegrass, whereas the fraction of N in clover donated by ryegrass was 5% (+/-1.2, n=9). The amount of ^1^4C transferred from ryegrass to clover was 1.7% (+/-0.1, n=9) of the ^1^4C-activity in the total above-ground plant biomass found in the unlabelled clover and with a transfer from clover to ryegrass being 0.4% (+/-0.1, n=9). ^1^5N-enriched compounds were not detected in percolating pore water, which may be caused by either dilution from irrigation or low availability of leachable N compounds. ^1^4C was found solely as ^1^4CO”2 in the pore water indicating that dissolved organic carbon (DOC) did not originate from fresh root deposits. Transfer of ^1^4C between the two species in the mixed crop alongside with high transfer of ^1^5N despite a large percolation of pore water indicates that part of the N transfer occurred in non-leachable N-forms. The amount of N transferred between the two species was found to depend on the ratio between dry matter accumulated in the donating and receiving species, the ^1^4C-allocation within the receiving species and the root turnover rate in the soil.

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Surface and subsurface organic carbon, microbial biomass and activity in a forest soil sequence

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This digital document is a journal article from Soil Biology and Biochemistry, published by Elsevier in 2006. The article is delivered in HTML format and is available in your Amazon.com Media Library immediately after purchase. You can view it with any web browser.

Description:
The distribution of organic carbon, microbial biomass and activity, from the surface down to 70cm, was investigated through three semiarid Mediterranean soils: (1) a Typic Calcixeroll covered with a native pinewood (NP), (2) a Typic Calcixerept under a mature pine plantation (PP) on abandoned agricultural terraces and (3) a Typic Haploxerept under a grassland (GS). NP and GS had the highest and lowest soil organic carbon (SOC) pools, respectively. Both of them had decreasing SOC contents with depth. PP, which held intermediate SOC levels, showed an increase in total organic C and humic substances C with depth due to their mineralization in the anciently ploughed topsoil layer. The soils were similarly ranked as regards their microbial biomass and activity: NP>PP>GS. In general, the microbial communities were less dense and active towards the deeper horizons. More specifically, PP and GS had a very populated and active top 20-cm layer, which was attributed to the dense root system of their grass cover. NP maintained high microbial biomass and activity levels from 0 to 70cm, progressively diminishing along with shrub root density (e.g. microbial biomass C dropped from 2342 to 394mgkg^-^1 soil). The latter soil presented the sharpest drop of its microbial properties with depth, what was considered an indicator of its quality. Generally decreasing patterns of microbial biomass and activity were not always coincident with previously published gradients of microbial metabolic abilities and genetic structure. This reinforces the need of combining biomass, activity and biodiversity measurements if the ecosystem’s functioning is to be fully understood and a real monitoring of degradation processes and restoration strategies is to be achieved.

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